Gene Expression Regulation, Bacterial

Vertommen, Didier, Natividad Ruiz, Pauline Leverrier, Thomas Silhavy, and Jean-François Collet. (2009) 2009. “Characterization of the Role of the Escherichia Coli Periplasmic Chaperone SurA Using Differential Proteomics”. Proteomics 9 (9): 2432-43. doi:10.1002/pmic.200800794.

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Gaal, Tamas, Mark Mandel, Thomas Silhavy, and Richard Gourse. (2006) 2006. “Crl Facilitates RNA Polymerase Holoenzyme Formation”. J Bacteriol 188 (22): 7966-70. doi:10.1128/JB.01266-06.

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Batchelor, Eric, Thomas Silhavy, and Mark Goulian. (2004) 2004. “Continuous Control in Bacterial Regulatory Circuits”. J Bacteriol 186 (22): 7618-25. doi:10.1128/JB.186.22.7618-7625.2004.

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Shuman, Howard, and Thomas Silhavy. (2003) 2003. “The Art and Design of Genetic Screens: Escherichia Coli”. Nat Rev Genet 4 (6): 419-31. doi:10.1038/nrg1087.

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Langen, Harper, Silhavy, and Howard. (2001) 2001. “Absence of the Outer Membrane Phospholipase A Suppresses the Temperature-Sensitive Phenotype of Escherichia Coli DegP Mutants and Induces the Cpx and sigma(E) Extracytoplasmic Stress Responses”. J Bacteriol 183 (18): 5230-8. doi:10.1128/JB.183.18.5230-5238.2001.

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Hung, Raivio, Jones, Silhavy, and Hultgren. (2001) 2001. “Cpx Signaling Pathway Monitors Biogenesis and Affects Assembly and Expression of P Pili”. EMBO J 20 (7): 1508-18. doi:10.1093/emboj/20.7.1508.

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Pugsley, and Silhavy. (1998) 1998. “Cell Regulation: Continually Redefining the Rules”. Curr Opin Microbiol 1 (2): 141-4. doi:10.1016/s1369-5274(98)80003-9.

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Russo, Slauch, and Silhavy. (1993) 1993. “Mutations That Affect Separate Functions of OmpR the Phosphorylated Regulator of Porin Transcription in Escherichia Coli”. J Mol Biol 231 (2): 261-73. doi:10.1006/jmbi.1993.1281.

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Conlin, Trun, Silhavy, and Miller. (1992) 1992. “Escherichia Coli PrlC Encodes an Endopeptidase and Is Homologous to the Salmonella Typhimurium OpdA Gene”. J Bacteriol 174 (18): 5881-7. doi:10.1128/jb.174.18.5881-5887.1992.

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Geiger, Russo, Silhavy, and Kennedy. (1992) 1992. “Membrane-Derived Oligosaccharides Affect Porin Osmoregulation Only in Media of Low Ionic Strength”. J Bacteriol 174 (4): 1410-3. doi:10.1128/jb.174.4.1410-1413.1992.

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Schatz, Bieker, Ottemann, Silhavy, and Beckwith. (1991) 1991. “One of Three Transmembrane Stretches Is Sufficient for the Functioning of the SecE Protein, a Membrane Component of the E. Coli Secretion Machinery”. EMBO J 10 (7): 1749-57.

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Slauch, and Silhavy. 1991. “Genetic Fusions As Experimental Tools”. Methods Enzymol 204: 213-48. doi:10.1016/0076-6879(91)04011-c.

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Rabinowitz, Joshua, and Thomas Silhavy. (2013) 2013. “Systems Biology: Metabolite Turns Master Regulator”. Nature 500 (7462): 283-4. doi:10.1038/nature12544.

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Guest, Randi, Steven Rutherford, and Thomas Silhavy. (2021) 2021. “Border Control: Regulating LPS Biogenesis”. Trends Microbiol 29 (4): 334-45. doi:10.1016/j.tim.2020.09.008.

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Guest, Randi, Daniel Samé Guerra, Maria Wissler, Jacqueline Grimm, and Thomas Silhavy. (2020) 2020. “YejM Modulates Activity of the YciM FtsH Protease Complex To Prevent Lethal Accumulation of Lipopolysaccharide”. MBio 11 (2). doi:10.1128/mBio.00598-20.

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Mitchell, Angela, and Thomas Silhavy. (2019) 2019. “Envelope Stress Responses: Balancing Damage Repair and Toxicity”. Nat Rev Microbiol 17 (7): 417-28. doi:10.1038/s41579-019-0199-0.

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Hart, Elizabeth, Aileen O’Connell, Kimberly Tang, Joseph Wzorek, Marcin Grabowicz, Daniel Kahne, and Thomas Silhavy. (2019) 2019. “Fine-Tuning of σ Activation Suppresses Multiple Assembly-Defective Mutations in Escherichia Coli”. J Bacteriol 201 (11). doi:10.1128/JB.00745-18.

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Rowland, Elizabeth, Todd Greco, Caroline Snowden, Anne McCabe, Thomas Silhavy, and Ileana Cristea. (2017) 2017. “Sirtuin Lipoamidase Activity Is Conserved in Bacteria As a Regulator of Metabolic Enzyme Complexes”. MBio 8 (5). doi:10.1128/mBio.01096-17.

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Igo, Slauch, and Silhavy. (1990) 1990. “Signal Transduction in Bacteria: Kinases That Control Gene Expression”. New Biol 2 (1): 5-9.

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Slauch, and Silhavy. (1989) 1989. “Genetic Analysis of the Switch That Controls Porin Gene Expression in Escherichia Coli K-12”. J Mol Biol 210 (2): 281-92. doi:10.1016/0022-2836(89)90330-6.

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Russo, and Silhavy. (1991) 1991. “EnvZ Controls the Concentration of Phosphorylated OmpR to Mediate Osmoregulation of the Porin Genes”. J Mol Biol 222 (3): 567-80. doi:10.1016/0022-2836(91)90497-t.

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Slauch, Russo, and Silhavy. (1991) 1991. “Suppressor Mutations in RpoA Suggest That OmpR Controls Transcription by Direct Interaction With the Alpha Subunit of RNA Polymerase”. J Bacteriol 173 (23): 7501-10. doi:10.1128/jb.173.23.7501-7510.1991.

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Slauch, and Silhavy. (1991) 1991. “Cis-Acting OmpF Mutations That Result in OmpR-Dependent Constitutive Expression”. J Bacteriol 173 (13): 4039-48. doi:10.1128/jb.173.13.4039-4048.1991.

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Bieker, and Silhavy. (1990) 1990. “The Genetics of Protein Secretion in E. Coli”. Trends Genet 6 (10): 329-34. doi:10.1016/0168-9525(90)90254-4.

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Danese, Snyder, Cosma, Davis, and Silhavy. (1995) 1995. “The Cpx Two-Component Signal Transduction Pathway of Escherichia Coli Regulates Transcription of the Gene Specifying the Stress-Inducible Periplasmic Protease, DegP”. Genes Dev 9 (4): 387-98. doi:10.1101/gad.9.4.387.

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Pratt, and Silhavy. (1994) 1994. “OmpR Mutants Specifically Defective for Transcriptional Activation”. J Mol Biol 243 (4): 579-94. doi:10.1016/0022-2836(94)90033-7.

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Carlson, and Silhavy. (1993) 1993. “Signal Sequence Processing Is Required for the Assembly of LamB Trimers in the Outer Membrane of Escherichia Coli”. J Bacteriol 175 (11): 3327-34. doi:10.1128/jb.175.11.3327-3334.1993.

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Snyder, Davis, Danese, Cosma, and Silhavy. (1995) 1995. “Overproduction of NlpE, a New Outer Membrane Lipoprotein, Suppresses the Toxicity of Periplasmic LacZ by Activation of the Cpx Signal Transduction Pathway”. J Bacteriol 177 (15): 4216-23. doi:10.1128/jb.177.15.4216-4223.1995.

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Hsing, and Silhavy. (1997) 1997. “Function of Conserved Histidine-243 in Phosphatase Activity of EnvZ, the Sensor for Porin Osmoregulation in Escherichia Coli”. J Bacteriol 179 (11): 3729-35. doi:10.1128/jb.179.11.3729-3735.1997.

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Danese, and Silhavy. (1997) 1997. “The sigma(E) and the Cpx Signal Transduction Systems Control the Synthesis of Periplasmic Protein-Folding Enzymes in Escherichia Coli”. Genes Dev 11 (9): 1183-93. doi:10.1101/gad.11.9.1183.

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Pratt, and Silhavy. (1996) 1996. “The Response Regulator SprE Controls the Stability of RpoS”. Proc Natl Acad Sci U S A 93 (6): 2488-92. doi:10.1073/pnas.93.6.2488.

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Cosma, Danese, Carlson, Silhavy, and Snyder. (1995) 1995. “Mutational Activation of the Cpx Signal Transduction Pathway of Escherichia Coli Suppresses the Toxicity Conferred by Certain Envelope-Associated Stresses”. Mol Microbiol 18 (3): 491-505. doi:10.1111/j.1365-2958.1995.mmi_18030491.x.

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Raivio, Popkin, and Silhavy. (1999) 1999. “The Cpx Envelope Stress Response Is Controlled by Amplification and Feedback Inhibition”. J Bacteriol 181 (17): 5263-72. doi:10.1128/JB.181.17.5263-5272.1999.

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Raivio, and Silhavy. (1999) 1999. “The SigmaE and Cpx Regulatory Pathways: Overlapping But Distinct Envelope Stress Responses”. Curr Opin Microbiol 2 (2): 159-65. doi:10.1016/S1369-5274(99)80028-9.

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Gibson, and Silhavy. (1999) 1999. “The LysR Homolog LrhA Promotes RpoS Degradation by Modulating Activity of the Response Regulator SprE”. J Bacteriol 181 (2): 563-71. doi:10.1128/JB.181.2.563-571.1999.

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Danese, Oliver, Barr, Bowman, Rick, and Silhavy. (1998) 1998. “Accumulation of the Enterobacterial Common Antigen Lipid II Biosynthetic Intermediate Stimulates DegP Transcription in Escherichia Coli”. J Bacteriol 180 (22): 5875-84. doi:10.1128/JB.180.22.5875-5884.1998.

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Pratt, and Silhavy. (1998) 1998. “Crl Stimulates RpoS Activity During Stationary Phase”. Mol Microbiol 29 (5): 1225-36. doi:10.1046/j.1365-2958.1998.01007.x.

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Danese, and Silhavy. (1998) 1998. “CpxP, a Stress-Combative Member of the Cpx Regulon”. J Bacteriol 180 (4): 831-9. doi:10.1128/JB.180.4.831-839.1998.

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Otto, Karen, and Thomas Silhavy. (2002) 2002. “Surface Sensing and Adhesion of Escherichia Coli Controlled by the Cpx-Signaling Pathway”. Proc Natl Acad Sci U S A 99 (4): 2287-92. doi:10.1073/pnas.042521699.

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Ruiz, CN Peterson, and Silhavy. (2001) 2001. “RpoS-Dependent Transcriptional Control of SprE: Regulatory Feedback Loop”. J Bacteriol 183 (20): 5974-81. doi:10.1128/JB.183.20.5974-5981.2001.

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Raivio, Laird, Joly, and Silhavy. (2000) 2000. “Tethering of CpxP to the Inner Membrane Prevents Spheroplast Induction of the Cpx Envelope Stress Response”. Mol Microbiol 37 (5): 1186-97. doi:10.1046/j.1365-2958.2000.02074.x.

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Gibson, and Silhavy. (2000) 2000. “SprE Levels Are Growth Phase Regulated in a sigma(S)-Dependent Manner at the Level of Translation”. J Bacteriol 182 (14): 4117-20. doi:10.1128/JB.182.14.4117-4120.2000.

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Hand, Nicholas, and Thomas Silhavy. (2003) 2003. “Null Mutations in a Nudix Gene, YgdP, Implicate an Alarmone Response in a Novel Suppression of Hybrid Jamming”. J Bacteriol 185 (22): 6530-9. doi:10.1128/JB.185.22.6530-6539.2003.

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Ruiz, Natividad, and Thomas Silhavy. (2003) 2003. “Constitutive Activation of the Escherichia Coli Pho Regulon Upregulates RpoS Translation in an Hfq-Dependent Fashion”. J Bacteriol 185 (20): 5984-92. doi:10.1128/JB.185.20.5984-5992.2003.

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Ruiz, Natividad, and Thomas Silhavy. (2005) 2005. “Sensing External Stress: Watchdogs of the Escherichia Coli Cell Envelope”. Curr Opin Microbiol 8 (2): 122-6. doi:10.1016/j.mib.2005.02.013.

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Mandel, Mark, and Thomas Silhavy. (2005) 2005. “Starvation for Different Nutrients in Escherichia Coli Results in Differential Modulation of RpoS Levels and Stability”. J Bacteriol 187 (2): 434-42. doi:10.1128/JB.187.2.434-442.2005.

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Duguay, Amy, and Thomas Silhavy. (2004) 2004. “Quality Control in the Bacterial Periplasm”. Biochim Biophys Acta 1694 (1-3): 121-34. doi:10.1016/j.bbamcr.2004.04.012.

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Peterson, Celeste, Natividad Ruiz, and Thomas Silhavy. (2004) 2004. “RpoS Proteolysis Is Regulated by a Mechanism That Does Not Require the SprE (RssB) Response Regulator Phosphorylation Site”. J Bacteriol 186 (21): 7403-10. doi:10.1128/JB.186.21.7403-7410.2004.

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Ureta, Alejandro, Robert Endres, Ned Wingreen, and Thomas Silhavy. (2007) 2007. “Kinetic Analysis of the Assembly of the Outer Membrane Protein LamB in Escherichia Coli Mutants Each Lacking a Secretion or Targeting Factor in a Different Cellular Compartment”. J Bacteriol 189 (2): 446-54. doi:10.1128/JB.01103-06.

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Peterson, Celeste, Valerie Carabetta, Tahmeena Chowdhury, and Thomas Silhavy. (2006) 2006. “LrhA Regulates RpoS Translation in Response to the Rcs Phosphorelay System in Escherichia Coli”. J Bacteriol 188 (9): 3175-81. doi:10.1128/JB.188.9.3175-3181.2006.

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