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Rabinowitz, Joshua, and Thomas Silhavy. (2013) 2013. “Systems Biology: Metabolite Turns Master Regulator”. Nature 500 (7462): 283-4. doi:10.1038/nature12544.

Fredriksson, Asa, Manuel Ballesteros, Celeste Peterson, Orjan Persson, Thomas Silhavy, and Thomas Nyström. (2007) 2007. “Decline in Ribosomal Fidelity Contributes to the Accumulation and Stabilization of the Master Stress Response Regulator SigmaS Upon Carbon Starvation”. Genes Dev 21 (7): 862-74. doi:10.1101/gad.409407.

Lee, Yvonne, Patricia DiGiuseppe, Thomas Silhavy, and Scott Hultgren. (2004) 2004. “P Pilus Assembly Motif Necessary for Activation of the CpxRA Pathway by PapE in Escherichia Coli”. J Bacteriol 186 (13): 4326-37. doi:10.1128/JB.186.13.4326-4337.2004.

Langen, Harper, Silhavy, and Howard. (2001) 2001. “Absence of the Outer Membrane Phospholipase A Suppresses the Temperature-Sensitive Phenotype of Escherichia Coli DegP Mutants and Induces the Cpx and sigma(E) Extracytoplasmic Stress Responses”. J Bacteriol 183 (18): 5230-8. doi:10.1128/JB.183.18.5230-5238.2001.

Hung, Raivio, Jones, Silhavy, and Hultgren. (2001) 2001. “Cpx Signaling Pathway Monitors Biogenesis and Affects Assembly and Expression of P Pili”. EMBO J 20 (7): 1508-18. doi:10.1093/emboj/20.7.1508.

Raivio, and Silhavy. 2001. “Periplasmic Stress and ECF Sigma Factors”. Annu Rev Microbiol 55: 591-624. doi:10.1146/annurev.micro.55.1.591.

Danese, and Silhavy. 1998. “Targeting and Assembly of Periplasmic and Outer-Membrane Proteins in Escherichia Coli”. Annu Rev Genet 32: 59-94. doi:10.1146/annurev.genet.32.1.59.

Jones, Danese, Pinkner, Silhavy, and Hultgren. (1997) 1997. “The Chaperone-Assisted Membrane Release and Folding Pathway Is Sensed by Two Signal Transduction Systems”. EMBO J 16 (21): 6394-406. doi:10.1093/emboj/16.21.6394.

Falke, Blair, Silhavy, and Schmitt. (1995) 1995. “BLAST 1995: International Conference on Bacterial Locomotion and Signal Transduction”. Mol Microbiol 16 (6): 1037-50. doi:10.1111/j.1365-2958.1995.tb02329.x.

Guest, Randi, Daniel Samé Guerra, Maria Wissler, Jacqueline Grimm, and Thomas Silhavy. (2020) 2020. “YejM Modulates Activity of the YciM FtsH Protease Complex To Prevent Lethal Accumulation of Lipopolysaccharide”. MBio 11 (2). doi:10.1128/mBio.00598-20.

Hart, Elizabeth, Aileen O’Connell, Kimberly Tang, Joseph Wzorek, Marcin Grabowicz, Daniel Kahne, and Thomas Silhavy. (2019) 2019. “Fine-Tuning of σ Activation Suppresses Multiple Assembly-Defective Mutations in Escherichia Coli”. J Bacteriol 201 (11). doi:10.1128/JB.00745-18.

Igo, Slauch, and Silhavy. (1990) 1990. “Signal Transduction in Bacteria: Kinases That Control Gene Expression”. New Biol 2 (1): 5-9.

Slauch, and Silhavy. (1989) 1989. “Genetic Analysis of the Switch That Controls Porin Gene Expression in Escherichia Coli K-12”. J Mol Biol 210 (2): 281-92. doi:10.1016/0022-2836(89)90330-6.

Igo, Ninfa, Stock, and Silhavy. (1989) 1989. “Phosphorylation and Dephosphorylation of a Bacterial Transcriptional Activator by a Transmembrane Receptor”. Genes Dev 3 (11): 1725-34. doi:10.1101/gad.3.11.1725.

Russo, and Silhavy. (1991) 1991. “EnvZ Controls the Concentration of Phosphorylated OmpR to Mediate Osmoregulation of the Porin Genes”. J Mol Biol 222 (3): 567-80. doi:10.1016/0022-2836(91)90497-t.

Pratt, and Silhavy. (1994) 1994. “OmpR Mutants Specifically Defective for Transcriptional Activation”. J Mol Biol 243 (4): 579-94. doi:10.1016/0022-2836(94)90033-7.

Danese, Snyder, Cosma, Davis, and Silhavy. (1995) 1995. “The Cpx Two-Component Signal Transduction Pathway of Escherichia Coli Regulates Transcription of the Gene Specifying the Stress-Inducible Periplasmic Protease, DegP”. Genes Dev 9 (4): 387-98. doi:10.1101/gad.9.4.387.

Raivio, and Silhavy. (1997) 1997. “Transduction of Envelope Stress in Escherichia Coli by the Cpx Two-Component System”. J Bacteriol 179 (24): 7724-33. doi:10.1128/jb.179.24.7724-7733.1997.

Danese, and Silhavy. (1997) 1997. “The sigma(E) and the Cpx Signal Transduction Systems Control the Synthesis of Periplasmic Protein-Folding Enzymes in Escherichia Coli”. Genes Dev 11 (9): 1183-93. doi:10.1101/gad.11.9.1183.

Cosma, Danese, Carlson, Silhavy, and Snyder. (1995) 1995. “Mutational Activation of the Cpx Signal Transduction Pathway of Escherichia Coli Suppresses the Toxicity Conferred by Certain Envelope-Associated Stresses”. Mol Microbiol 18 (3): 491-505. doi:10.1111/j.1365-2958.1995.mmi_18030491.x.

Snyder, Davis, Danese, Cosma, and Silhavy. (1995) 1995. “Overproduction of NlpE, a New Outer Membrane Lipoprotein, Suppresses the Toxicity of Periplasmic LacZ by Activation of the Cpx Signal Transduction Pathway”. J Bacteriol 177 (15): 4216-23. doi:10.1128/jb.177.15.4216-4223.1995.

Raivio, Popkin, and Silhavy. (1999) 1999. “The Cpx Envelope Stress Response Is Controlled by Amplification and Feedback Inhibition”. J Bacteriol 181 (17): 5263-72. doi:10.1128/JB.181.17.5263-5272.1999.

Raivio, and Silhavy. (1999) 1999. “The SigmaE and Cpx Regulatory Pathways: Overlapping But Distinct Envelope Stress Responses”. Curr Opin Microbiol 2 (2): 159-65. doi:10.1016/S1369-5274(99)80028-9.

Danese, Oliver, Barr, Bowman, Rick, and Silhavy. (1998) 1998. “Accumulation of the Enterobacterial Common Antigen Lipid II Biosynthetic Intermediate Stimulates DegP Transcription in Escherichia Coli”. J Bacteriol 180 (22): 5875-84. doi:10.1128/JB.180.22.5875-5884.1998.

Danese, and Silhavy. (1998) 1998. “CpxP, a Stress-Combative Member of the Cpx Regulon”. J Bacteriol 180 (4): 831-9. doi:10.1128/JB.180.4.831-839.1998.

Otto, Karen, and Thomas Silhavy. (2002) 2002. “Surface Sensing and Adhesion of Escherichia Coli Controlled by the Cpx-Signaling Pathway”. Proc Natl Acad Sci U S A 99 (4): 2287-92. doi:10.1073/pnas.042521699.

Ruiz, Natividad, and Thomas Silhavy. (2005) 2005. “Sensing External Stress: Watchdogs of the Escherichia Coli Cell Envelope”. Curr Opin Microbiol 8 (2): 122-6. doi:10.1016/j.mib.2005.02.013.

Bowers, Christina Wilson, Fion Lau, and Thomas Silhavy. (2003) 2003. “Secretion of LamB-LacZ by the Signal Recognition Particle Pathway of Escherichia Coli”. J Bacteriol 185 (19): 5697-705. doi:10.1128/JB.185.19.5697-5705.2003.

DiGiuseppe, Patricia, and Thomas Silhavy. (2003) 2003. “Signal Detection and Target Gene Induction by the CpxRA Two-Component System”. J Bacteriol 185 (8): 2432-40. doi:10.1128/JB.185.8.2432-2440.2003.

Dwyer, Robert, Juliana Malinverni, Dana Boyd, Jon Beckwith, and Thomas Silhavy. (2014) 2014. “Folding LacZ in the Periplasm of Escherichia Coli”. J Bacteriol 196 (18): 3343-50. doi:10.1128/JB.01843-14.

Konovalova, Anna, Jaclyn Schwalm, and Thomas Silhavy. (2016) 2016. “A Suppressor Mutation That Creates a Faster and More Robust σE Envelope Stress Response”. J Bacteriol 198 (17): 2345-51. doi:10.1128/JB.00340-16.