Gaal, Tamas, Mark Mandel, Thomas Silhavy, and Richard Gourse. (2006) 2006. “Crl Facilitates RNA Polymerase Holoenzyme Formation”. J Bacteriol 188 (22): 7966-70. doi:10.1128/JB.01266-06.

Batchelor, Eric, Thomas Silhavy, and Mark Goulian. (2004) 2004. “Continuous Control in Bacterial Regulatory Circuits”. J Bacteriol 186 (22): 7618-25. doi:10.1128/JB.186.22.7618-7625.2004.

Russo, Slauch, and Silhavy. (1993) 1993. “Mutations That Affect Separate Functions of OmpR the Phosphorylated Regulator of Porin Transcription in Escherichia Coli”. J Mol Biol 231 (2): 261-73. doi:10.1006/jmbi.1993.1281.

Slauch, and Silhavy. 1991. “Genetic Fusions As Experimental Tools”. Methods Enzymol 204: 213-48. doi:10.1016/0076-6879(91)04011-c.

Garrett, and Silhavy. (1987) 1987. “Isolation of Mutations in the Alpha Operon of Escherichia Coli That Suppress the Transcriptional Defect Conferred by a Mutation in the Porin Regulatory Gene EnvZ”. J Bacteriol 169 (4): 1379-85. doi:10.1128/jb.169.4.1379-1385.1987.

Silhavy, and Beckwith. (1985) 1985. “Uses of Lac Fusions for the Study of Biological Problems”. Microbiol Rev 49 (4): 398-418. doi:10.1128/mr.49.4.398-418.1985.

Taylor, Garrett, Sodergren, and Silhavy. (1985) 1985. “Mutations That Define the Promoter of OmpF, a Gene Specifying a Major Outer Membrane Porin Protein”. J Bacteriol 162 (3): 1054-60. doi:10.1128/jb.162.3.1054-1060.1985.

Kiino, and Silhavy. (1984) 1984. “Mutation PrlF1 Relieves the Lethality Associated With Export of Beta-Galactosidase Hybrid Proteins in Escherichia Coli”. J Bacteriol 158 (3): 878-83. doi:10.1128/jb.158.3.878-883.1984.

Taylor, Hall, and Silhavy. (1983) 1983. “Isolation and Characterization of Mutations Altering Expression of the Major Outer Membrane Porin Proteins Using the Local Anaesthetic Procaine”. J Mol Biol 166 (3): 273-82. doi:10.1016/s0022-2836(83)80085-0.

Hall, and Silhavy. (1981) 1981. “The OmpB Locus and the Regulation of the Major Outer Membrane Porin Proteins of Escherichia Coli K12”. J Mol Biol 146 (1): 23-43. doi:10.1016/0022-2836(81)90364-8.

Emr, Hanley-Way, and Silhavy. (1981) 1981. “Suppressor Mutations That Restore Export of a Protein With a Defective Signal Sequence”. Cell 23 (1): 79-88. doi:10.1016/0092-8674(81)90272-5.

Hall, and Silhavy. (1979) 1979. “Transcriptional Regulation of Escherichia Coli K-12 Major Outer Membrane Protein 1b”. J Bacteriol 140 (2): 342-50. doi:10.1128/jb.140.2.342-350.1979.

Igo, Ninfa, Stock, and Silhavy. (1989) 1989. “Phosphorylation and Dephosphorylation of a Bacterial Transcriptional Activator by a Transmembrane Receptor”. Genes Dev 3 (11): 1725-34. doi:10.1101/gad.3.11.1725.

Igo, Ninfa, and Silhavy. (1989) 1989. “A Bacterial Environmental Sensor That Functions As a Protein Kinase and Stimulates Transcriptional Activation”. Genes Dev 3 (5): 598-605. doi:10.1101/gad.3.5.598.

Slauch, and Silhavy. (1991) 1991. “Cis-Acting OmpF Mutations That Result in OmpR-Dependent Constitutive Expression”. J Bacteriol 173 (13): 4039-48. doi:10.1128/jb.173.13.4039-4048.1991.

Russo, and Silhavy. (1992) 1992. “Alpha: The Cinderella Subunit of RNA Polymerase”. J Biol Chem 267 (21): 14515-8.

Slauch, Russo, and Silhavy. (1991) 1991. “Suppressor Mutations in RpoA Suggest That OmpR Controls Transcription by Direct Interaction With the Alpha Subunit of RNA Polymerase”. J Bacteriol 173 (23): 7501-10. doi:10.1128/jb.173.23.7501-7510.1991.

Danese, Snyder, Cosma, Davis, and Silhavy. (1995) 1995. “The Cpx Two-Component Signal Transduction Pathway of Escherichia Coli Regulates Transcription of the Gene Specifying the Stress-Inducible Periplasmic Protease, DegP”. Genes Dev 9 (4): 387-98. doi:10.1101/gad.9.4.387.

Danese, and Silhavy. (1997) 1997. “The sigma(E) and the Cpx Signal Transduction Systems Control the Synthesis of Periplasmic Protein-Folding Enzymes in Escherichia Coli”. Genes Dev 11 (9): 1183-93. doi:10.1101/gad.11.9.1183.

Danese, Oliver, Barr, Bowman, Rick, and Silhavy. (1998) 1998. “Accumulation of the Enterobacterial Common Antigen Lipid II Biosynthetic Intermediate Stimulates DegP Transcription in Escherichia Coli”. J Bacteriol 180 (22): 5875-84. doi:10.1128/JB.180.22.5875-5884.1998.

Danese, and Silhavy. (1998) 1998. “CpxP, a Stress-Combative Member of the Cpx Regulon”. J Bacteriol 180 (4): 831-9. doi:10.1128/JB.180.4.831-839.1998.

Otto, Karen, and Thomas Silhavy. (2002) 2002. “Surface Sensing and Adhesion of Escherichia Coli Controlled by the Cpx-Signaling Pathway”. Proc Natl Acad Sci U S A 99 (4): 2287-92. doi:10.1073/pnas.042521699.

Ruiz, CN Peterson, and Silhavy. (2001) 2001. “RpoS-Dependent Transcriptional Control of SprE: Regulatory Feedback Loop”. J Bacteriol 183 (20): 5974-81. doi:10.1128/JB.183.20.5974-5981.2001.

Hand, and Silhavy. 2000. “A Practical Guide to the Construction and Use of Lac Fusions in Escherichia Coli”. Methods Enzymol 326: 11-35. doi:10.1016/s0076-6879(00)26044-8.

Mandel, Mark, and Thomas Silhavy. (2005) 2005. “Starvation for Different Nutrients in Escherichia Coli Results in Differential Modulation of RpoS Levels and Stability”. J Bacteriol 187 (2): 434-42. doi:10.1128/JB.187.2.434-442.2005.

Ruiz, Natividad, and Thomas Silhavy. (2003) 2003. “Constitutive Activation of the Escherichia Coli Pho Regulon Upregulates RpoS Translation in an Hfq-Dependent Fashion”. J Bacteriol 185 (20): 5984-92. doi:10.1128/JB.185.20.5984-5992.2003.

DiGiuseppe, Patricia, and Thomas Silhavy. (2003) 2003. “Signal Detection and Target Gene Induction by the CpxRA Two-Component System”. J Bacteriol 185 (8): 2432-40. doi:10.1128/JB.185.8.2432-2440.2003.

Zafar, Ammar, Valerie Carabetta, Mark Mandel, and Thomas Silhavy. (2014) 2014. “Transcriptional Occlusion Caused by Overlapping Promoters”. Proc Natl Acad Sci U S A 111 (4): 1557-61. doi:10.1073/pnas.1323413111.