Slauch, and Silhavy. (1989) 1989. “Genetic Analysis of the Switch That Controls Porin Gene Expression in Escherichia Coli K-12”. J Mol Biol 210 (2): 281-92. doi:10.1016/0022-2836(89)90330-6.

Igo, Ninfa, Stock, and Silhavy. (1989) 1989. “Phosphorylation and Dephosphorylation of a Bacterial Transcriptional Activator by a Transmembrane Receptor”. Genes Dev 3 (11): 1725-34. doi:10.1101/gad.3.11.1725.

Igo, Ninfa, and Silhavy. (1989) 1989. “A Bacterial Environmental Sensor That Functions As a Protein Kinase and Stimulates Transcriptional Activation”. Genes Dev 3 (5): 598-605. doi:10.1101/gad.3.5.598.

Trun, and Silhavy. (1989) 1989. “PrlC, a Suppressor of Signal Sequence Mutations in Escherichia Coli, Can Direct the Insertion of the Signal Sequence into the Membrane”. J Mol Biol 205 (4): 665-76. doi:10.1016/0022-2836(89)90312-4.

Igo, and Silhavy. (1988) 1988. “EnvZ, a Transmembrane Environmental Sensor of Escherichia Coli K-12, Is Phosphorylated in Vitro”. J Bacteriol 170 (12): 5971-3. doi:10.1128/jb.170.12.5971-5973.1988.

Trun, Stader, Lupas, Kumamoto, and Silhavy. (1988) 1988. “Two Cellular Components, PrlA and SecB, That Recognize Different Sequence Determinants Are Required for Efficient Protein Export”. J Bacteriol 170 (12): 5928-30. doi:10.1128/jb.170.12.5928-5930.1988.

Stader, and Silhavy. (1988) 1988. “A Progenitor of the Outer Membrane LamB Trimer”. J Bacteriol 170 (4): 1973-4. doi:10.1128/jb.170.4.1973-1974.1988.

Russo, and Silhavy. (1991) 1991. “EnvZ Controls the Concentration of Phosphorylated OmpR to Mediate Osmoregulation of the Porin Genes”. J Mol Biol 222 (3): 567-80. doi:10.1016/0022-2836(91)90497-t.

Slauch, Russo, and Silhavy. (1991) 1991. “Suppressor Mutations in RpoA Suggest That OmpR Controls Transcription by Direct Interaction With the Alpha Subunit of RNA Polymerase”. J Bacteriol 173 (23): 7501-10. doi:10.1128/jb.173.23.7501-7510.1991.

Misra, Peterson, Ferenci, and Silhavy. (1991) 1991. “A Genetic Approach for Analyzing the Pathway of LamB Assembly into the Outer Membrane of Escherichia Coli”. J Biol Chem 266 (21): 13592-7.

Slauch, and Silhavy. (1991) 1991. “Cis-Acting OmpF Mutations That Result in OmpR-Dependent Constitutive Expression”. J Bacteriol 173 (13): 4039-48. doi:10.1128/jb.173.13.4039-4048.1991.

Snyder, and Silhavy. (1992) 1992. “Enhanced Export of Beta-Galactosidase Fusion Proteins in PrlF Mutants Is Lon Dependent”. J Bacteriol 174 (17): 5661-8. doi:10.1128/jb.174.17.5661-5668.1992.

Snyder, and Silhavy. (1995) 1995. “Beta-Galactosidase Is Inactivated by Intermolecular Disulfide Bonds and Is Toxic When Secreted to the Periplasm of Escherichia Coli”. J Bacteriol 177 (4): 953-63. doi:10.1128/jb.177.4.953-963.1995.

Pratt, and Silhavy. (1994) 1994. “OmpR Mutants Specifically Defective for Transcriptional Activation”. J Mol Biol 243 (4): 579-94. doi:10.1016/0022-2836(94)90033-7.

Flower, Doebele, and Silhavy. (1994) 1994. “PrlA and PrlG Suppressors Reduce the Requirement for Signal Sequence Recognition”. J Bacteriol 176 (18): 5607-14. doi:10.1128/jb.176.18.5607-5614.1994.

Carlson, and Silhavy. (1993) 1993. “Signal Sequence Processing Is Required for the Assembly of LamB Trimers in the Outer Membrane of Escherichia Coli”. J Bacteriol 175 (11): 3327-34. doi:10.1128/jb.175.11.3327-3334.1993.

Hsing, and Silhavy. (1997) 1997. “Function of Conserved Histidine-243 in Phosphatase Activity of EnvZ, the Sensor for Porin Osmoregulation in Escherichia Coli”. J Bacteriol 179 (11): 3729-35. doi:10.1128/jb.179.11.3729-3735.1997.

Danese, and Silhavy. (1997) 1997. “The sigma(E) and the Cpx Signal Transduction Systems Control the Synthesis of Periplasmic Protein-Folding Enzymes in Escherichia Coli”. Genes Dev 11 (9): 1183-93. doi:10.1101/gad.11.9.1183.

Pratt, Hsing, Gibson, and Silhavy. (1996) 1996. “From Acids to OsmZ: Multiple Factors Influence Synthesis of the OmpF and OmpC Porins in Escherichia Coli”. Mol Microbiol 20 (5): 911-7. doi:10.1111/j.1365-2958.1996.tb02532.x.

Pratt, and Silhavy. (1996) 1996. “The Response Regulator SprE Controls the Stability of RpoS”. Proc Natl Acad Sci U S A 93 (6): 2488-92. doi:10.1073/pnas.93.6.2488.

Kenney, Bauer, and Silhavy. (1995) 1995. “Phosphorylation-Dependent Conformational Changes in OmpR, an Osmoregulatory DNA-Binding Protein of Escherichia Coli”. Proc Natl Acad Sci U S A 92 (19): 8866-70. doi:10.1073/pnas.92.19.8866.

Pratt, and Silhavy. (1995) 1995. “Identification of Base Pairs Important for OmpR-DNA Interaction”. Mol Microbiol 17 (3): 565-73. doi:10.1111/j.1365-2958.1995.mmi_17030565.x.

Snyder, Davis, Danese, Cosma, and Silhavy. (1995) 1995. “Overproduction of NlpE, a New Outer Membrane Lipoprotein, Suppresses the Toxicity of Periplasmic LacZ by Activation of the Cpx Signal Transduction Pathway”. J Bacteriol 177 (15): 4216-23. doi:10.1128/jb.177.15.4216-4223.1995.

Hsing, Russo, Bernd, and Silhavy. (1998) 1998. “Mutations That Alter the Kinase and Phosphatase Activities of the Two-Component Sensor EnvZ”. J Bacteriol 180 (17): 4538-46. doi:10.1128/JB.180.17.4538-4546.1998.

Cosma, Crotwell, Burrows, and Silhavy. (1998) 1998. “Folding-Based Suppression of Extracytoplasmic Toxicity Conferred by Processing-Defective LamB”. J Bacteriol 180 (12): 3120-30. doi:10.1128/JB.180.12.3120-3130.1998.

Danese, and Silhavy. (1998) 1998. “CpxP, a Stress-Combative Member of the Cpx Regulon”. J Bacteriol 180 (4): 831-9. doi:10.1128/JB.180.4.831-839.1998.

Silhavy. (1997) 1997. “Death by Lethal Injection”. Science 278 (5340): 1085-6. doi:10.1126/science.278.5340.1085.

Raivio, Laird, Joly, and Silhavy. (2000) 2000. “Tethering of CpxP to the Inner Membrane Prevents Spheroplast Induction of the Cpx Envelope Stress Response”. Mol Microbiol 37 (5): 1186-97. doi:10.1046/j.1365-2958.2000.02074.x.

Duguay, Amy Rizzitello, and Thomas Silhavy. (2002) 2002. “Signal Sequence Mutations As Tools for the Characterization of LamB Folding Intermediates”. J Bacteriol 184 (24): 6918-28. doi:10.1128/JB.184.24.6918-6928.2002.

Braun, Martin, and Thomas Silhavy. (2002) 2002. “Imp/OstA/Is/Required/for/Cell/Envelope/Biogenesis/in/Escherichia/Coli”. Mol Microbiol 45 (5): 1289-302. doi:10.1046/j.1365-2958.2002.03091.x.

Otto, Karen, and Thomas Silhavy. (2002) 2002. “Surface Sensing and Adhesion of Escherichia Coli Controlled by the Cpx-Signaling Pathway”. Proc Natl Acad Sci U S A 99 (4): 2287-92. doi:10.1073/pnas.042521699.

Rizzitello, Harper, and Silhavy. (2001) 2001. “Genetic Evidence for Parallel Pathways of Chaperone Activity in the Periplasm of Escherichia Coli”. J Bacteriol 183 (23): 6794-800. doi:10.1128/JB.183.23.6794-6800.2001.

Ruiz, Natividad, Brian Falcone, Daniel Kahne, and Thomas Silhavy. (2005) 2005. “Chemical Conditionality: A Genetic Strategy to Probe Organelle Assembly”. Cell 121 (2): 307-17. doi:10.1016/j.cell.2005.02.014.

Wu, Tao, Juliana Malinverni, Natividad Ruiz, Seokhee Kim, Thomas Silhavy, and Daniel Kahne. (2005) 2005. “Identification of a Multicomponent Complex Required for Outer Membrane Biogenesis in Escherichia Coli”. Cell 121 (2): 235-45. doi:10.1016/j.cell.2005.02.015.

Hand, Nicholas, and Thomas Silhavy. (2003) 2003. “Null Mutations in a Nudix Gene, YgdP, Implicate an Alarmone Response in a Novel Suppression of Hybrid Jamming”. J Bacteriol 185 (22): 6530-9. doi:10.1128/JB.185.22.6530-6539.2003.

Bowers, Christina Wilson, Fion Lau, and Thomas Silhavy. (2003) 2003. “Secretion of LamB-LacZ by the Signal Recognition Particle Pathway of Escherichia Coli”. J Bacteriol 185 (19): 5697-705. doi:10.1128/JB.185.19.5697-5705.2003.

DiGiuseppe, Patricia, and Thomas Silhavy. (2003) 2003. “Signal Detection and Target Gene Induction by the CpxRA Two-Component System”. J Bacteriol 185 (8): 2432-40. doi:10.1128/JB.185.8.2432-2440.2003.

Sklar, Joseph, Tao Wu, Daniel Kahne, and Thomas Silhavy. (2007) 2007. “Defining the Roles of the Periplasmic Chaperones SurA, Skp, and DegP in Escherichia Coli”. Genes Dev 21 (19): 2473-84. doi:10.1101/gad.1581007.

Sklar, Joseph, Tao Wu, Luisa Gronenberg, Juliana Malinverni, Daniel Kahne, and Thomas Silhavy. (2007) 2007. “Lipoprotein SmpA Is a Component of the YaeT Complex That Assembles Outer Membrane Proteins in Escherichia Coli”. Proc Natl Acad Sci U S A 104 (15): 6400-5. doi:10.1073/pnas.0701579104.

Button, Julie, Thomas Silhavy, and Natividad Ruiz. (2007) 2007. “A Suppressor of Cell Death Caused by the Loss of SigmaE Downregulates Extracytoplasmic Stress Responses and Outer Membrane Vesicle Production in Escherichia Coli”. J Bacteriol 189 (5): 1523-30. doi:10.1128/JB.01534-06.

Ruiz, Natividad, Tao Wu, Daniel Kahne, and Thomas Silhavy. (2006) 2006. “Probing the Barrier Function of the Outer Membrane With Chemical Conditionality”. ACS Chem Biol 1 (6): 385-95. doi:10.1021/cb600128v.

Ureta, Alejandro, Robert Endres, Ned Wingreen, and Thomas Silhavy. (2007) 2007. “Kinetic Analysis of the Assembly of the Outer Membrane Protein LamB in Escherichia Coli Mutants Each Lacking a Secretion or Targeting Factor in a Different Cellular Compartment”. J Bacteriol 189 (2): 446-54. doi:10.1128/JB.01103-06.

Malinverni, Juliana, John Werner, Seokhee Kim, Joseph Sklar, Daniel Kahne, Rajeev Misra, and Thomas Silhavy. (2006) 2006. “YfiO Stabilizes the YaeT Complex and Is Essential for Outer Membrane Protein Assembly in Escherichia Coli”. Mol Microbiol 61 (1): 151-64. doi:10.1111/j.1365-2958.2006.05211.x.

Malinverni, Juliana, and Thomas Silhavy. (2009) 2009. “An ABC Transport System That Maintains Lipid Asymmetry in the Gram-Negative Outer Membrane”. Proc Natl Acad Sci U S A 106 (19): 8009-14. doi:10.1073/pnas.0903229106.

Chimalakonda, Gitanjali, Natividad Ruiz, Shu-Sin Chng, Ronald Garner, Daniel Kahne, and Thomas Silhavy. (2011) 2011. “Lipoprotein LptE Is Required for the Assembly of LptD by the Beta-Barrel Assembly Machine in the Outer Membrane of Escherichia Coli”. Proc Natl Acad Sci U S A 108 (6): 2492-7. doi:10.1073/pnas.1019089108.

Cowles, Charles, Yongfeng Li, Martin Semmelhack, Ileana Cristea, and Thomas Silhavy. (2011) 2011. “The Free and Bound Forms of Lpp Occupy Distinct Subcellular Locations in Escherichia Coli”. Mol Microbiol 79 (5): 1168-81. doi:10.1111/j.1365-2958.2011.07539.x.

Ruiz, Natividad, Shu-Sin Chng, Annie Hiniker, Daniel Kahne, and Thomas Silhavy. (2010) 2010. “Nonconsecutive Disulfide Bond Formation in an Essential Integral Outer Membrane Protein”. Proc Natl Acad Sci U S A 107 (27): 12245-50. doi:10.1073/pnas.1007319107.

Stelten, Johna, Filo Silva, Dominique Belin, and Thomas Silhavy. (2009) 2009. “Effects of Antibiotics and a Proto-Oncogene Homolog on Destruction of Protein Translocator SecY”. Science 325 (5941): 753-6. doi:10.1126/science.1172221.

Dwyer, Robert, Dante Ricci, Lucy Colwell, Thomas Silhavy, and Ned Wingreen. (2013) 2013. “Predicting Functionally Informative Mutations in Escherichia Coli BamA Using Evolutionary Covariance Analysis”. Genetics 195 (2): 443-55. doi:10.1534/genetics.113.155861.

Schwalm, Jaclyn, Tara Mahoney, Garner Soltes, and Thomas Silhavy. (2013) 2013. “Role for Skp in LptD Assembly in Escherichia Coli”. J Bacteriol 195 (16): 3734-42. doi:10.1128/JB.00431-13.